Volume 34, Issue 2
TECHNICAL REPORT

GerminaR: An R package for germination analysis with the interactive web application “GerminaQuant for R”

Flavio Lozano‐Isla

Department of Botany, CCB, Plant Physiology Laboratory, Federal University of Pernambuco, Recife, Brazil

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Omar E. Benites‐Alfaro

Research Informatics Unit, International Potato Center (CIP), Lima, Peru

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Marcelo F. Pompelli

Corresponding Author

E-mail address: mfpompelli@gmail.com

Department of Botany, CCB, Plant Physiology Laboratory, Federal University of Pernambuco, Recife, Brazil

Correspondence

Marcelo F. Pompelli, Plant Physiology Laboratory, Federal University of Pernambuco, Department of Botany, CB, Recife, PE5, Brazil 50670901.

Email: mfpompelli@gmail.com

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First published: 20 March 2019
Citations: 8
Funding information Federal University of Pernambuco; National Council for Scientific and Technological Development

Abstract

The germination process is one of the most sensitive stages in the early development of plants. The behavior and the responses of the plants in agronomic, biological and ecophysiological studies can be inferred through this process. However, the calculation of the germination variables is laborious. In this sense, the GerminaR package for the statistical software application R, which includes an interactive web application “GerminaQuant for R” for users without programming knowledge is presented. These tools should contribute greatly to improve analyses in germination studies.

Number of times cited according to CrossRef: 8

  • Improved seed germination and biomass yield in five Mediterranean ecotypes of Piptatherum miliaceum – A native grass species for bioenergy purposes, Industrial Crops and Products, 10.1016/j.indcrop.2019.111891, 143, (111891), (2020).
  • Alpine Pioneer Plants in Soil Bioengineering for Slope Stabilization and Restoration: Results of a Preliminary Analysis of Seed Germination and Future Perspectives, Sustainability, 10.3390/su12177190, 12, 17, (7190), (2020).
  • Reproductive characteristics that favor invasiveness in (L.) R. Br., Plant Species Biology, 10.1111/1442-1984.12278, 35, 4, (270-282), (2020).
  • Influence of Mechanical Scarification and Open-Field Sowing Procedure over Cassia ferruginea Germination Process, Journal of Horticulture and Plant Research, 10.18052/www.scipress.com/JHPR.9.30, 9, (30-38), (2020).
  • Evaluation of Harvesting and Seed Dormancy Overcoming Techniques in Hymenaea courbaril Germination, Journal of Horticulture and Plant Research, 10.18052/www.scipress.com/JHPR.9.18, 9, (18-29), (2020).
  • Germination of Cenchrus ciliaris , Pennisetum divisum , and Panicum turgidum is seasonally dependent , Botany, 10.1139/cjb-2019-0194, (1-10), (2020).
  • Seed germination of mudflat species responds differently to prior exposure to hypoxic (flooded) environments, Seed Science Research, 10.1017/S0960258520000240, (1-7), (2020).
  • Germination asynchrony is increased by dual seed bank presence in two desert perennial halophytes, Botany, 10.1139/cjb-2019-0071, (2019).